Stewart McDonald has a tip sheet that says (in part):
" Now that the neck and saddles are adjusted, you are ready to finish the nut slots. The slot depth is generally between .007" and .030" above the first fret. Plain strings (high E, B, and G) are in the .007" - .012" range and the wound strings (D, A, and low E) are generally around .013" - .020".
The actual height is up to you, the gauge of strings, and other factors.
Start a little high and bring them down lower as needed."
You can read the whole thing at
http://www.stewmac.com/freeinfo/i-4003/
4003_07setup.html